| Pos. | Player | Goals | Team |
|---|---|---|---|
| 1 | Dominick Kumbela | 19 | Eintracht Braunschweig |
| 2 | Ronny | 18 | Hertha Berlin |
| 2 | Daniel Ginczek | 18 | (FC) St. Pauli |
| 4 | Mohammadou Idrissou | 17 | 1. (FC) Kaiserslautern |
| 5 | Boubacar Sanogo | 15 | Energie Cottbus |
| 6 | Albert Bunjaku | 13 | 1. (FC) Kaiserslautern |
| 6 | Anthony Ujah | 13 | 1. (FC) Köln |
| 8 | Benjamin Lauth | 12 | 1860 München |
| 9 | Dennis Kruppke | 11 | Eintracht Braunschweig |
| 9 | Edmond Kapllani | 11 | FSV Frankfurt |
| 9 | Frank Löning | 11 | SV Sandhausen |
| 9 | Adrian Ramos | 11 | Hertha Berlin |
| 13 | Jan Hochscheidt | 10 | Erzgebirge Aue |
| 13 | Simon Terodde | 10 | 1. (FC) Union Berlin |
| 13 | Torsten Mattuschka | 10 | 1. (FC) Union Berlin |
| 13 | John Verhoek | 10 | FSV Frankfurt |
| 13 | Caiuby | 10 | (FC) Ingolstadt 04 |
| 18 | Robert Lechleiter | 9 | VfR Aalen |
| 18 | Adam Nemec | 9 | 1. (FC) Union Berlin |
| 20 | Francky Sembolo | 8 | Jahn Regensburg |
| 20 | Zlatko Dedic | 8 | VfL Bochum |
| 20 | Jakub Sylvestr | 8 | Erzgebirge Aue |
| 23 | Sami Allagui | 7 | Hertha Berlin |
| 23 | Philipp Hofmann | 7 | SC Paderborn |
| 23 | Andrew Wooten | 7 | SV Sandhausen |
| 23 | Martin Dausch | 7 | VfR Aalen |
| 23 | Fin Bartels | 7 | (FC) St. Pauli |
| 28 | Moritz Stoppelkamp | 6 | 1860 München |
| 28 | Sören Brandy | 6 | MSV Duisburg |
| 28 | Michael Görlitz | 6 | FSV Frankfurt |
| 28 | Zafer Yelen | 6 | FSV Frankfurt |
| 28 | Michael Poté | 6 | Dynamo Dresden |
| 28 | Christian Eigler | 6 | (FC) Ingolstadt 04 |
| 28 | Alban Meha | 6 | SC Paderborn |
| 28 | Christian Clemens | 6 | 1. (FC) Köln |
| 36 | Idir Ouali | 5 | Dynamo Dresden |
| 36 | Mario Vrancic | 5 | SC Paderborn |
| 36 | Daniel Adlung | 5 | Energie Cottbus |
| 36 | Adil Chihi | 5 | 1. (FC) Köln |
| 36 | Alexander Baumjohann | 5 | 1. (FC) Kaiserslautern |
| 36 | Stefan Leitl | 5 | (FC) Ingolstadt 04 |
| 36 | Branimir Bajic | 5 | MSV Duisburg |
| 36 | Kevin McKenna | 5 | 1. (FC) Köln |
| 36 | Marcel Reichwein | 5 | VfR Aalen |
| 36 | Deniz Yilmaz | 5 | SC Paderborn |
| 36 | Sandro Wagner | 5 | Hertha Berlin |
| 47 | Rob Friend | 4 | 1860 München |
| 47 | Manuel Schäffler | 4 | (FC) Ingolstadt 04 |
| 47 | Mirko Boland | 4 | Eintracht Braunschweig |
| 47 | Timo Perthel | 4 | MSV Duisburg |